The CSV file with the chemogenomic set can be downloaded from here.
Compound name
Protein family
Target name
Affinity Biochemical (nM)
Affinity On-target Cellular (nM)
Chemogenomic Set
Recommended Concentration
More
GW7647
NR
PPARA
EC50 0 6.3
NR
1 µM
Compound EUbOPEN ID
EUB0000185b
SMILES
CC(C)(C(=O)O)SC1=CC=C(C=C1)CCN(CCCCC2CCCCC2)C(=O)NC3CCCCC3
InChIKey
PKNYXWMTHFMHKD-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
hPPAR, NR1C1
Mode of action
Agonist
Affinity on-target cellular assay type
cell-based
Affinity on-target cellular source knowledge
Selectivity platform
Reportergenassay
Selectivity platform number of targets
26
Selectivity remarks
fold-activation(PPARD) = 19.05, inactive at 1 µM for UL48, RXRA, HNF4A, NR2C1, NR2E1, NR4A1, NR5A1
Selectivity Source Knowledge
Compound image
L-165,041
NR
PPARA
EC50 0 1000
NR
1 µM
Compound EUbOPEN ID
EUB0000188b
SMILES
CCCC1=C(C=CC(=C1O)C(=O)C)OCCCOC2=CC=C(C=C2)OCC(=O)O
InChIKey
HBBVCKCCQCQCTJ-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
hPPAR, NR1C1
Mode of action
Agonist
Affinity on-target cellular assay type
cell-based
Affinity on-target cellular source knowledge
Selectivity platform
Reportergenassay
Selectivity platform number of targets
26
Selectivity remarks
inactive at 1 µM for UL48, RXRA, HNF4A, NR2C1, NR2E1, NR4A1, NR5A1
Selectivity Source Knowledge
Compound image
L-165,041
NR
PPARD
EC50 0 15
NR
1 µM
Compound EUbOPEN ID
EUB0000188b
SMILES
CCCC1=C(C=CC(=C1O)C(=O)C)OCCCOC2=CC=C(C=C2)OCC(=O)O
InChIKey
HBBVCKCCQCQCTJ-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
NUC1, NUCII, FAAR, NR1C2
Mode of action
Agonist
Affinity on-target cellular assay type
cell-based
Affinity on-target cellular source knowledge
Selectivity platform
Reportergenassay
Selectivity platform number of targets
26
Selectivity remarks
inactive at 1 µM for UL48, RXRA, HNF4A, NR2C1, NR2E1, NR4A1, NR5A1
Selectivity Source Knowledge
Compound image
L-165,041
NR
PPARG
EC50 0 980
NR
1 µM
Compound EUbOPEN ID
EUB0000188b
SMILES
CCCC1=C(C=CC(=C1O)C(=O)C)OCCCOC2=CC=C(C=C2)OCC(=O)O
InChIKey
HBBVCKCCQCQCTJ-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
PPARG1, PPARG2, NR1C3, PPARgamma
Mode of action
Agonist
Affinity on-target cellular assay type
cell-based
Affinity on-target cellular source knowledge
Selectivity platform
Reportergenassay
Selectivity platform number of targets
26
Selectivity remarks
inactive at 1 µM for UL48, RXRA, HNF4A, NR2C1, NR2E1, NR4A1, NR5A1
Selectivity Source Knowledge
Compound image
Rosiglitazone
NR
PPARG
EC50 0 35
NR
1 µM
Compound EUbOPEN ID
EUB0000190b
SMILES
CN(CCOc1ccc(CC2SC(=O)NC2=O)cc1)c1ccccn1
InChIKey
YASAKCUCGLMORW-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
PPARG1, PPARG2, NR1C3, PPARgamma
Mode of action
Agonist
Affinity on-target cellular assay type
cell-based
Affinity on-target cellular source knowledge
Selectivity platform
Reportergenassay
Selectivity platform number of targets
26
Selectivity remarks
inactive at 1 µM for UL48, RXRA, HNF4A, NR2C1, NR2E1, NR4A1, NR5A1
Selectivity Source Knowledge
Compound image
BAY-299
Bromodomain
BRD1@BRD
IC50 = 67
IC50 = 503
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000191c
SMILES
Cc1cc2c(cc1N1C(=O)c3cccc4c(CCCO)ccc(c34)C1=O)n(C)c(=O)n2C
InChIKey
OFWWWKWUCDUISA-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
BRL, BRPF2
Mode of action
Inhibitor
Negative control
BAY-364
Affinity biochemical assay type
TR-FRET assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
CEREP panel (LeadProfilingScreen Eurofins)
Selectivity platform number of targets
68
Selectivity remarks
Screened at 10 µM against receptors, ion channels and enzymes, closest targets as % of contr.: A1 receptor (48%), Cl- channel (GABA-gated) (23%), PDE2A1 (49%), PDE5 (2%), >10000-fold selective; In vitro activity of closest targets (TR-FRET assays): IC50(BRPF1) = 3.15 µM, IC50(BRPF3) = 5.55 µM, IC50(TAF1L, BD2) = 0.106 µM, IC50(BRD4, BD1) >15 µM, IC50(BRD4,BD2) >20 µM; Screened in DSF assay against 48 bromodomains at 10 µM, closest targets: dTm(CECR2) = 3.5 K, dTm(EP300) = 3.5 K, dTm(BRD7) = 2.3 K; In vitro follow up ITC: Kd(CECR2) = 1.39 µM; Screened against31 bromodomains in (BROMOscan DiscoverX) at 100 nM, closest targets as % contr.: CREBBP (30%), TAF1L(BD2) (0.7%); Screened against 300 kinases at 10 µM, >10000-fold selective (PMID: 28402630)
Selectivity Source Knowledge
Compound image
BAY-299
Bromodomain
TAF1@BD2
IC50 = 8
IC50 = 970
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000191c
SMILES
Cc1cc2c(cc1N1C(=O)c3cccc4c(CCCO)ccc(c34)C1=O)n(C)c(=O)n2C
InChIKey
OFWWWKWUCDUISA-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
NSCL2, TAFII250, KAT4, DYT3/TAF1
Mode of action
Inhibitor
Negative control
BAY-364
Affinity biochemical assay type
TR-FRET assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
CEREP panel (LeadProfilingScreen Eurofins)
Selectivity platform number of targets
68
Selectivity remarks
Screened at 10 µM against receptors, ion channels and enzymes, closest targets as % of contr.: A1 receptor (48%), Cl- channel (GABA-gated) (23%), PDE2A1 (49%), PDE5 (2%), >10000-fold selective; In vitro activity of closest targets (TR-FRET assays): IC50(BRPF1) = 3.15 µM, IC50(BRPF3) = 5.55 µM, IC50(TAF1L, BD2) = 0.106 µM, IC50(BRD4, BD1) >15 µM, IC50(BRD4,BD2) >20 µM; Screened in DSF assay against 48 bromodomains at 10 µM, closest targets: dTm(CECR2) = 3.5 K, dTm(EP300) = 3.5 K, dTm(BRD7) = 2.3 K; In vitro follow up ITC: Kd(CECR2) = 1.39 µM; Screened against31 bromodomains in (BROMOscan DiscoverX) at 100 nM, closest targets as % contr.: CREBBP (30%), TAF1L(BD2) (0.7%); Screened against 300 kinases at 10 µM, >10000-fold selective (PMID: 28402630)
Selectivity Source Knowledge
Compound image
BAZ2-ICR
Bromodomain
BAZ2A@BRD
Kd = 109
EC50 < 1000
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000192d
SMILES
Cn1cc(CCn2cnc(-c3cnn(C)c3)c2-c2ccc(C#N)cc2)cn1
InChIKey
RRZVGDGTWNQAPW-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA0314, TIP5, WALp3
Mode of action
Inhibitor
Affinity biochemical assay type
ITC
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
FRAP assay (utilizing GFP-tagged BAZ2A full length protein transfected into U2OS cells)
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
47
Selectivity remarks
Screeed at 10 µM in thermal shift assays, dTm(BAZ2A) = 5.2 K, dTm(BAZ2B) = 3.8 K, dTm(CECR2) = 2.0 K; Follow-up in vitro potency (ITC): Kd(CECR2) = 1.55 µM (15-fold selective); Greater 100-fold selective for BRD4 (IC50 >50 µM, BRD4 AlphaScreen assay); Clean profile in CEREP screen against 55 targets (receptors, ion chanels) at 10 µM;
Selectivity Source Knowledge
Compound image
BAZ2-ICR
Bromodomain
BAZ2B@BRD
Kd = 170
EC50 < 1000
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000192d
SMILES
Cn1cc(CCn2cnc(-c3cnn(C)c3)c2-c2ccc(C#N)cc2)cn1
InChIKey
RRZVGDGTWNQAPW-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
WALp4
Mode of action
Inhibitor
Affinity biochemical assay type
ITC
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
FRAP assay (utilizing GFP-tagged BAZ2A full length protein transfected into U2OS cells)
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
47
Selectivity remarks
Screeed at 10 µM in thermal shift assays, dTm(BAZ2A) = 5.2 K, dTm(BAZ2B) = 3.8 K, dTm(CECR2) = 2.0 K; Follow-up in vitro potency (ITC): Kd(CECR2) = 1.55 µM (15-fold selective); Greater 100-fold selective for BRD4 (IC50 >50 µM, BRD4 AlphaScreen assay); Clean profile in CEREP screen against 55 targets (receptors, ion chanels) at 10 µM;
Selectivity Source Knowledge
Compound image
A-196
HMT
SUV420H1@Methyltransferase
IC50 = 25
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000193b
SMILES
Clc1cc2c(NC3CCCC3)nnc(-c3ccncc3)c2cc1Cl
InChIKey
ABGOSOMRWSYAOB-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
CGI-85
Mode of action
Inhibitor
Negative control
A-197,SGC2043
Affinity biochemical assay type
Scintillation proximity assay (SPA)
Affinity Biochemical Source Knowledge
Selectivity platform
Epigenetic methyltransferases panel, literature
Selectivity platform number of targets
29
Selectivity remarks
Highly selective in methyltransferase screen at 1 µM and 10 µM; Inactive against protein arginine methyltransferases and DNA methyltransferases; Selective against a panel of 9 epigenetic readers and chromatin binders; Screened against 125 nonepigenetic targets (CEREP panel: GPCRS, ion channels, transporters) at 10 µM, closest targets >50% inhibition: Adenosin A1 receptor (98%, Ki = 21 nM), Adenosin A2A receptor (98%, Ki = 28 nM), Cl-chanel (GABA-gated, 90%, Ki = 1.8 µM), Adenosin A2 receptor (74%, 2 µM), kappa (KOP, 62%, Ki >10 µM), NK2 (61%, Ki = 4.1 µM), delta2 (DOP, 51%, Ki = 9 µM)
Selectivity Source Knowledge
Compound image
A-196
HMT
SUV420H2@Methyltransferase
IC50 = 144
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000193b
SMILES
Clc1cc2c(NC3CCCC3)nnc(-c3ccncc3)c2cc1Cl
InChIKey
ABGOSOMRWSYAOB-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
MGC2705
Mode of action
Inhibitor
Negative control
A-197,SGC2043
Affinity biochemical assay type
Scintillation proximity assay (SPA)
Affinity Biochemical Source Knowledge
Selectivity platform
Epigenetic methyltransferases panel, literature
Selectivity platform number of targets
29
Selectivity remarks
Highly selective in methyltransferase screen at 1 µM and 10 µM; Inactive against protein arginine methyltransferases and DNA methyltransferases; Selective against a panel of 9 epigenetic readers and chromatin binders; Screened against 125 nonepigenetic targets (CEREP panel: GPCRS, ion channels, transporters) at 10 µM, closest targets >50% inhibition: Adenosin A1 receptor (98%, Ki = 21 nM), Adenosin A2A receptor (98%, Ki = 28 nM), Cl-chanel (GABA-gated, 90%, Ki = 1.8 µM), Adenosin A2 receptor (74%, 2 µM), kappa (KOP, 62%, Ki >10 µM), NK2 (61%, Ki = 4.1 µM), delta2 (DOP, 51%, Ki = 9 µM)
Selectivity Source Knowledge
Compound image
UNC0642
HMT
EHMT1/GLP@Methyltransferase
IC50 < 2.5
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000194b
SMILES
COc1cc2c(NC3CCN(C(C)C)CC3)nc(N3CCC(F)(F)CC3)nc2cc1OCCCN1CCCC1
InChIKey
RNAMYOYQYRYFQY-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
Eu-HMTase1, FLJ12879, KIAA1876, bA188C12.1, KMT1D, FLJ40292
Mode of action
Inhibitor
Affinity biochemical assay type
Enzymatic activity assay
Affinity Biochemical Source Knowledge
Selectivity platform
HMT panel, literature
Selectivity platform number of targets
16
Selectivity remarks
>100-fold selective against other HMTs, selective against 44 GPCRS, ion channels and transporters at 1 µM, closest targets as % of contr.: H3 (93%, Ki = 45 nM), µ opioid (74%, Ki >10 µM), a2C (67%, Ki > 10 µM), a1D (59%, Ki = 4.5 µM); Selective against 50 kinases at 10 µM
Selectivity Source Knowledge
Compound image
UNC0642
HMT
EHMT2/G9a@Methyltransferase
IC50 < 2.5
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000194b
SMILES
COc1cc2c(NC3CCN(C(C)C)CC3)nc(N3CCC(F)(F)CC3)nc2cc1OCCCN1CCCC1
InChIKey
RNAMYOYQYRYFQY-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
G9A, Em:AF134726.3, NG36/G9a, KMT1C
Mode of action
Inhibitor
Affinity biochemical assay type
Enzymatic activity assay
Affinity Biochemical Source Knowledge
Selectivity platform
HMT panel, literature
Selectivity platform number of targets
16
Selectivity remarks
>100-fold selective against other HMTs, selective against 44 GPCRS, ion channels and transporters at 1 µM, closest targets as % of contr.: H3 (93%, Ki = 45 nM), µ opioid (74%, Ki >10 µM), a2C (67%, Ki > 10 µM), a1D (59%, Ki = 4.5 µM); Selective against 50 kinases at 10 µM
Selectivity Source Knowledge
Compound image
I-CBP112
Bromodomain
CREBBP@BRD
Kd = 151
IC50 = 600
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000195c
SMILES
CCC(=O)N1CCOc2c(cc(-c3ccc(OC)c(OC)c3)cc2OC[C@H]2CCCN(C)C2)C1
InChIKey
YKNAKDFZAWQEEO-IBGZPJMESA-N
NCBI gene ID
UniProt ID
Synonyms
RTS, CBP, KAT3A
Mode of action
Inhibitor
Affinity biochemical assay type
ITC
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
42
Selectivity remarks
Screened at 2 µM via biolayer interferometry (BLI), weak inhibition of BET bromodomains at 2.0 µM (BRD2, BRD3, BRD4, BRDT on both BD1 and BD2), clean at screen with 200 nM; DSF assay screen against 43 bromodomain family members, closest targets: dTM(BRD2, BD1) = 1.35 K, dTM(BRD3, BD1) = 1.55 K, dTM(BRD4, BD1) = 2.09 K, dTm(BRD4, BD2) = 0.58 K; In vitro follow-up (ITC): Kd(BRD4, BD1) = 5.6 µM, Kd(BRD4, BD2) = 20 µM; Screened in CEREP selectivity panel against 104 targets (nuclear receptors, ion channels, and 32 enzyme assays (including 10 kinases, 9 proteases, and 5 phosphodiesterases) at 10 µM, closest targets as % of inhibition: a1A (89%), M2 (67%);
Selectivity Source Knowledge
Compound image
I-CBP112
Bromodomain
EP300@BRD
Kd = 625
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000195c
SMILES
CCC(=O)N1CCOc2c(cc(-c3ccc(OC)c(OC)c3)cc2OC[C@H]2CCCN(C)C2)C1
InChIKey
YKNAKDFZAWQEEO-IBGZPJMESA-N
NCBI gene ID
UniProt ID
Synonyms
p300, KAT3B
Mode of action
Inhibitor
Affinity biochemical assay type
ITC
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
42
Selectivity remarks
Screened at 2 µM via biolayer interferometry (BLI), weak inhibition of BET bromodomains at 2.0 µM (BRD2, BRD3, BRD4, BRDT on both BD1 and BD2), clean at screen with 200 nM; DSF assay screen against 43 bromodomain family members, closest targets: dTM(BRD2, BD1) = 1.35 K, dTM(BRD3, BD1) = 1.55 K, dTM(BRD4, BD1) = 2.09 K, dTm(BRD4, BD2) = 0.58 K; In vitro follow-up (ITC): Kd(BRD4, BD1) = 5.6 µM, Kd(BRD4, BD2) = 20 µM; Screened in CEREP selectivity panel against 104 targets (nuclear receptors, ion channels, and 32 enzyme assays (including 10 kinases, 9 proteases, and 5 phosphodiesterases) at 10 µM, closest targets as % of inhibition: a1A (89%), M2 (67%);
Selectivity Source Knowledge
Compound image
PFI-2
HMT
SETD7
IC50 = 2
EC50 < 10000
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000196bCl
SMILES
Cl.O=C([C@@H](Cc1cccc(C(F)(F)F)c1)NS(=O)(=O)c1cc(F)c2c(c1)CCNC2)N1CCCC1
InChIKey
ZADKZNVAJGEFLC-ZMBIFBSDSA-N
NCBI gene ID
UniProt ID
Synonyms
KMT7, SET7, SET7/9, SET9
Mode of action
Inhibitor
Negative control
(S)-PFI-2
Affinity biochemical assay type
Scintillation proximity assay (SPA)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Immunoblot (increase in nuclear YAP levels by treatment of MEFs (from Setd7+/+ mice) with 10 µM PFI-2)
Selectivity platform
Methyltransferase panel, literature
Selectivity platform number of targets
19
Selectivity remarks
Screened at 50 µM, >1000-fold selective over other methyltransferases (G9a, EZH2, EHMT1, SUV39H2, EZH1, SUV420H1, SUV420H2, SETD8, SETD2, PRMT1, PRMT3, PRMT5, PRMT8, SETDB1, MLL1, DOT1L, WHSC1, SMYD2, DNMT1); Screened against 137 ion channels, GPCRs, and enzymes at 10 µM, closest targets: Ki(A2B) = 1.3 µM, Ki(BB3) = 8.1 µM, Ki(motilin) = 7.2 µM, Ki(KOP) = 3.8 µM
Selectivity Source Knowledge
Compound image
SGC707
HMT
PRMT3@Methyltransferase
Kd = 85
IC50 = 91
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000197b
SMILES
O=C(NCC(=O)N1CCCC1)Nc1ccc2cnccc2c1
InChIKey
DMIDPTCQPIJYFE-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Mode of action
Allosteric inhibitor
Negative control
XY1
Affinity biochemical assay type
SPR
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Western Blot assay (measuring H4R3me2a levels in HEK293 cells co-transfected with FLAG tagged PRMT3 (wt))
Selectivity platform
Methyltransferase panel, literature
Selectivity platform number of targets
31
Selectivity remarks
Screened at 1 µM, 5 µM and 20 µM, closest target at 20 µM: METTL21a (60% of contr.); Selective against panel of 250 enzymes (kinases, GPCRs, ion channels, transporters) at 10 µM, closest targets as % of contr.: 5HT2B (69%, Ki >15 µM), BRSK1 (56%), DLK1 (60%), MSK2 (55%), PKG2 (58%), PRKX (61%);
Selectivity Source Knowledge
Compound image
GSK591
HMT
PRMT5
IC50 = 4
IC50 = 3
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000198b
SMILES
O=C(NC[C@H](O)CN1CCc2ccccc2C1)c1ccnc(NC2CCC2)c1
InChIKey
TWKYXZSXXXKKJU-FQEVSTJZSA-N
NCBI gene ID
UniProt ID
Synonyms
HRMT1L5, HSL7, IBP72, JBP1, SKB1, SKB1Hs
Mode of action
Inhibitor
Negative control
SGC2096
Affinity biochemical assay type
HTRF assay (monomethylation of H4R3 on a histone H4 peptide by PRMT5:MEP50)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
In-Cell Western (ICW) format assay (inhibition of symmetric arginine methylation of SmD3 in Z-138 cells)
Selectivity platform
Methyltransferase panel, literature
Selectivity platform number of targets
32
Selectivity remarks
Screened at 1 and 10 µM, closest target NSD3 (75% at 10 µM), GSK591 is highly selective
Selectivity Source Knowledge
Compound image
PFI-3
Bromodomain
PBRM1@BRD
Kd = 48
EC50 < 1000
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000199c
SMILES
O=C(/C=C/N1C[C@H]2C[C@@H]1CN2c1ccccn1)c1ccccc1O
InChIKey
INAICWLVUAKEPB-QSTFCLMHSA-N
NCBI gene ID
UniProt ID
Synonyms
BAF180, PB1
Mode of action
Inhibitor
Negative control
PFI-3oMet
Affinity biochemical assay type
ITC
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
FRAP assay in U2OS cells full-length PB1 protein
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
48
Selectivity remarks
Screened in DSF assay at 10 µM, dTm(PBRM1,BD5) = 9.1 K, dTm(SMARCA2) = 8.2 K, dTM(SMARCA4) = 7.0 K, other targets dTm <1 K; Screened in CEREP panel against 102 cellular receptors and 30 enzymes, closest targets: IC50(A1A) = 0.44 µM, IC50(A1B) = 3.6 µM, IC50(kKOP) = 13 µM, IC50(5-HAT2B) = 4.0 µM;
Selectivity Source Knowledge
Compound image
PFI-3
Bromodomain
SMARCA2@BRD
Kd = 89
EC50 < 1000
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000199c
SMILES
O=C(/C=C/N1C[C@H]2C[C@@H]1CN2c1ccccn1)c1ccccc1O
InChIKey
INAICWLVUAKEPB-QSTFCLMHSA-N
NCBI gene ID
UniProt ID
Synonyms
BAF190, hSNF2a, hBRM, Sth1p, SNF2LA, BRM, SNF2, SWI2
Mode of action
Inhibitor
Negative control
PFI-3oMet
Affinity biochemical assay type
ITC
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
FRAP assay in U2OS cells full-length SMARCA2 protein
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
48
Selectivity remarks
Screened in DSF assay at 10 µM, dTm(PBRM1,BD5) = 9.1 K, dTm(SMARCA2) = 8.2 K, dTM(SMARCA4) = 7.0 K, other targets dTm <1 K; Screened in CEREP panel against 102 cellular receptors and 30 enzymes, closest targets: IC50(A1A) = 0.44 µM, IC50(A1B) = 3.6 µM, IC50(kKOP) = 13 µM, IC50(5-HAT2B) = 4.0 µM;
Selectivity Source Knowledge
Compound image
PFI-3
Bromodomain
SMARCA4@BRD
EC50 < 1000
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000199c
SMILES
O=C(/C=C/N1C[C@H]2C[C@@H]1CN2c1ccccn1)c1ccccc1O
InChIKey
INAICWLVUAKEPB-QSTFCLMHSA-N
NCBI gene ID
UniProt ID
Synonyms
hSNF2b, BRG1, BAF190, SNF2, SWI2, SNF2-BETA, SNF2LB, FLJ39786
Mode of action
Inhibitor
Negative control
PFI-3oMet
Affinity on-target cellular assay type
FRAP assay in U2OS cells full-length SMARCA4 protein
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
48
Selectivity remarks
Screened in DSF assay at 10 µM, dTm(PBRM1,BD5) = 9.1 K, dTm(SMARCA2) = 8.2 K, dTM(SMARCA4) = 7.0 K, other targets dTm <1 K; Screened in CEREP panel against 102 cellular receptors and 30 enzymes, closest targets: IC50(A1A) = 0.44 µM, IC50(A1B) = 3.6 µM, IC50(kKOP) = 13 µM, IC50(5-HAT2B) = 4.0 µM;
Selectivity Source Knowledge
Compound image
(-)-JQ1
Bromodomain
BRD2@BD1
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000200b
SMILES
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@H](CC(=O)OC(C)(C)C)c1nnc(C)n1-2
InChIKey
DNVXATUJJDPFDM-QGZVFWFLSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA9001, RING3, D6S113E, NAT, FSRG1
Mode of action
Negative control for (+)-JQ1
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel (DSF assays, literature)
Selectivity platform number of targets
37
Selectivity remarks
Screened at 10 µM in DSF-assay, closest target: dTm(CREBBP) = 1.18 K;
Selectivity Source Knowledge
Compound image
(-)-JQ1
Bromodomain
BRD2@BD2
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000200b
SMILES
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@H](CC(=O)OC(C)(C)C)c1nnc(C)n1-2
InChIKey
DNVXATUJJDPFDM-QGZVFWFLSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA9001, RING3, D6S113E, NAT, FSRG1
Mode of action
Negative control for (+)-JQ1
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel (DSF assays, literature)
Selectivity platform number of targets
37
Selectivity remarks
Screened at 10 µM in DSF-assay, closest target: dTm(CREBBP) = 1.18 K;
Selectivity Source Knowledge
Compound image
(-)-JQ1
Bromodomain
BRD3@BD1
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000200b
SMILES
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@H](CC(=O)OC(C)(C)C)c1nnc(C)n1-2
InChIKey
DNVXATUJJDPFDM-QGZVFWFLSA-N
NCBI gene ID
UniProt ID
Synonyms
RING3L, ORFX, KIAA0043
Mode of action
Negative control for (+)-JQ1
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel (DSF assays, literature)
Selectivity platform number of targets
37
Selectivity remarks
Screened at 10 µM in DSF-assay, closest target: dTm(CREBBP) = 1.18 K;
Selectivity Source Knowledge
Compound image
(-)-JQ1
Bromodomain
BRD3@BD2
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000200b
SMILES
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@H](CC(=O)OC(C)(C)C)c1nnc(C)n1-2
InChIKey
DNVXATUJJDPFDM-QGZVFWFLSA-N
NCBI gene ID
UniProt ID
Synonyms
RING3L, ORFX, KIAA0043
Mode of action
Negative control for (+)-JQ1
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel (DSF assays, literature)
Selectivity platform number of targets
37
Selectivity remarks
Screened at 10 µM in DSF-assay, closest target: dTm(CREBBP) = 1.18 K;
Selectivity Source Knowledge
Compound image
(-)-JQ1
Bromodomain
BRD4@BD1
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000200b
SMILES
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@H](CC(=O)OC(C)(C)C)c1nnc(C)n1-2
InChIKey
DNVXATUJJDPFDM-QGZVFWFLSA-N
NCBI gene ID
UniProt ID
Synonyms
HUNKI, MCAP, CAP, HUNK1
Mode of action
Negative control for (+)-JQ1
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel (DSF assays, literature)
Selectivity platform number of targets
37
Selectivity remarks
Screened at 10 µM in DSF-assay, closest target: dTm(CREBBP) = 1.18 K;
Selectivity Source Knowledge
Compound image
(-)-JQ1
Bromodomain
BRD4@BD2
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000200b
SMILES
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@H](CC(=O)OC(C)(C)C)c1nnc(C)n1-2
InChIKey
DNVXATUJJDPFDM-QGZVFWFLSA-N
NCBI gene ID
UniProt ID
Synonyms
HUNKI, MCAP, CAP, HUNK1
Mode of action
Negative control for (+)-JQ1
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel (DSF assays, literature)
Selectivity platform number of targets
37
Selectivity remarks
Screened at 10 µM in DSF-assay, closest target: dTm(CREBBP) = 1.18 K;
Selectivity Source Knowledge
Compound image
(-)-JQ1
Bromodomain
BRDT@BD1
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000200b
SMILES
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@H](CC(=O)OC(C)(C)C)c1nnc(C)n1-2
InChIKey
DNVXATUJJDPFDM-QGZVFWFLSA-N
NCBI gene ID
UniProt ID
Synonyms
BRD6, CT9
Mode of action
Negative control for (+)-JQ1
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel (DSF assays, literature)
Selectivity platform number of targets
37
Selectivity remarks
Screened at 10 µM in DSF-assay, closest target: dTm(CREBBP) = 1.18 K;
Selectivity Source Knowledge
Compound image
(-)-JQ1
Bromodomain
BRDT@BD2
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000200b
SMILES
Cc1sc2c(c1C)C(c1ccc(Cl)cc1)=N[C@H](CC(=O)OC(C)(C)C)c1nnc(C)n1-2
InChIKey
DNVXATUJJDPFDM-QGZVFWFLSA-N
NCBI gene ID
UniProt ID
Synonyms
BRD6, CT9
Mode of action
Negative control for (+)-JQ1
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel (DSF assays, literature)
Selectivity platform number of targets
37
Selectivity remarks
Screened at 10 µM in DSF-assay, closest target: dTm(CREBBP) = 1.18 K;
Selectivity Source Knowledge
Compound image
NVS-CECR2-1
Bromodomain
CECR2@BRD
Kd = 80
IC50 = 255
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000201c
SMILES
CCCS(=O)(=O)c1nc(NC2CC2)cc(-c2ccc3c(ccn3C3CC(C)(C)NC(C)(C)C3)c2)n1
InChIKey
XVECNLUKQDKOST-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA1740
Mode of action
Inhibitor
Negative control
NVS-CECR2-C
Affinity biochemical assay type
ITC
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (dose-dependent displacement from histone H3.3 in HEK293T cells)
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
48
Selectivity remarks
DSF-assay, dTm(CECR2) = 12.52 K, closest targets, dTM 1-2 K: BRD4(BD2), BRD7, FALZ, SMARCA4, TAF1 (BD2);
Selectivity Source Knowledge
Compound image
NI-57
Bromodomain
BRPF1@BRD
IC50 = 114
IC50 = 70
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000205c
SMILES
COc1cc(C#N)ccc1S(=O)(=O)Nc1ccc2c(c1)cc(C)c(=O)n2C
InChIKey
UEMQPCYDWCSVCU-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
BR140
Mode of action
Inhibitor
Negative control
NI-198
Affinity biochemical assay type
AlphaScreen
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
47
Selectivity remarks
No targets confirmed outside BRD family; Screened in BROMOscan panel against 46 targets, closest target: IC50(TRIM24) = 1600 nM, 500-fold selective; Clean profile in CEREP screen against 55 ligand receptors, ion channels and transporters, at 10 µM
Selectivity Source Knowledge
Compound image
NI-57
Bromodomain
BRD1@BRD
IC50 = 619
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000205c
SMILES
COc1cc(C#N)ccc1S(=O)(=O)Nc1ccc2c(c1)cc(C)c(=O)n2C
InChIKey
UEMQPCYDWCSVCU-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
BRL, BRPF2
Mode of action
Inhibitor
Negative control
NI-198
Affinity biochemical assay type
AlphaScreen
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
47
Selectivity remarks
No targets confirmed outside BRD family; Screened in BROMOscan panel against 46 targets, closest target: IC50(TRIM24) = 1600 nM, 500-fold selective; Clean profile in CEREP screen against 55 ligand receptors, ion channels and transporters, at 10 µM
Selectivity Source Knowledge
Compound image
NI-57
Bromodomain
BRPF3@BRD
IC50 = 1010
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000205c
SMILES
COc1cc(C#N)ccc1S(=O)(=O)Nc1ccc2c(c1)cc(C)c(=O)n2C
InChIKey
UEMQPCYDWCSVCU-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA1286
Mode of action
Inhibitor
Negative control
NI-198
Affinity biochemical assay type
AlphaScreen
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
47
Selectivity remarks
No targets confirmed outside BRD family; Screened in BROMOscan panel against 46 targets, closest target: IC50(TRIM24) = 1600 nM, 500-fold selective; Clean profile in CEREP screen against 55 ligand receptors, ion channels and transporters, at 10 µM
Selectivity Source Knowledge
Compound image
SGC-GAK-1
Protein Kinase
GAK
Kd = 1.9
IC50 = 120
Kinase set
1 µM
Compound EUbOPEN ID
EUB0000207b
SMILES
COc1cc(Nc2ccnc3ccc(Br)cc23)cc(OC)c1OC
InChIKey
AUOSKLDNVNGKRR-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
DNAJC26
Mode of action
Inhibitor
Negative control
SGC-GAK-1N
Affinity biochemical assay type
Competition binding assay (DiscoverX)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
KinomeScan (DiscoverX)
Selectivity platform number of targets
468
Selectivity remarks
Screened at 1 µM, in vitro follow-up of closest targets: Kd(RIPK2) = 110 nM, Kd(ADCK3) = 190 nM, Kd(NLK) = 520 nM, Kd(ACVR1) = 980 nM; Cellular selectivity: IC50(RIPK2) = 360 nM (NanoBRET assay), others not tested;
Selectivity Source Knowledge
Compound image
SGC-CBP30
Bromodomain
CREBBP@BRD
Kd = 21
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000208c
SMILES
COc1ccc(CCc2nc3cc(-c4c(C)noc4C)ccc3n2C[C@H](C)N2CCOCC2)cc1Cl
InChIKey
GEPYBHCJBORHCE-SFHVURJKSA-N
NCBI gene ID
UniProt ID
Synonyms
RTS, CBP, KAT3A
Mode of action
Inhibitor
Negative control
BDOIA513
Affinity biochemical assay type
ITC
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
45
Selectivity remarks
Screened at 10 µM in DSF assay, dTM (CREBBPA/EP300A) = 9.6/ 10.4 K, closest targets: dTM(BRD4) = 2.0 K, dTM(BRD3) = 1.9 K, dTm(BRD2) = 1.4 K, dTm (BRD3) = 1.2 K; Follow-up Kds via ITC: Kd(BRD4 at BD1/ BD2) = 0.854/ 4.88 µM, Ki(BRD3 at BD1/ BD2) = 1.09/ 2.19 µM, Kd(BRD2 at BD1/BD2) = 1.01/ 1.76 µM, Kd(BRD3 at BD1/BD2) = 1.09/ 2.19µM; Screened in CEREP panel against 104 receptors, ion channels and other enzymes, closest targets: Ki(alpha2A) = 570 nM, Ki(alpha2C) = 110 nM, Ki(PAF) = 540 nM;
Selectivity Source Knowledge
Compound image
SGC-CBP30
Bromodomain
EP300@BRD
Kd = 38
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000208c
SMILES
COc1ccc(CCc2nc3cc(-c4c(C)noc4C)ccc3n2C[C@H](C)N2CCOCC2)cc1Cl
InChIKey
GEPYBHCJBORHCE-SFHVURJKSA-N
NCBI gene ID
UniProt ID
Synonyms
p300, KAT3B
Mode of action
Inhibitor
Negative control
BDOIA513
Affinity biochemical assay type
ITC
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
45
Selectivity remarks
Screened at 10 µM in DSF assay, dTM (CREBBPA/EP300A) = 9.6/ 10.4 K, closest targets: dTM(BRD4) = 2.0 K, dTM(BRD3) = 1.9 K, dTm(BRD2) = 1.4 K, dTm (BRD3) = 1.2 K; Follow-up Kds via ITC: Kd(BRD4 at BD1/ BD2) = 0.854/ 4.88 µM, Ki(BRD3 at BD1/ BD2) = 1.09/ 2.19 µM, Kd(BRD2 at BD1/BD2) = 1.01/ 1.76 µM, Kd(BRD3 at BD1/BD2) = 1.09/ 2.19µM; Screened in CEREP panel against 104 receptors, ion channels and other enzymes, closest targets: Ki(alpha2A) = 570 nM, Ki(alpha2C) = 110 nM, Ki(PAF) = 540 nM;
Selectivity Source Knowledge
Compound image
UNC1999
HMT
EZH1@Methyltransferase
IC50 = 45
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000209b
SMILES
CCCc1cc(C)[nH]c(=O)c1CNC(=O)c1cc(-c2ccc(N3CCN(C(C)C)CC3)nc2)cc2c1cnn2C(C)C
InChIKey
DPJNKUOXBZSZAI-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA0388, KMT6B
Mode of action
Inhibitor
Negative control
UNC2400
Affinity biochemical assay type
Radiometric kinase assay
Affinity Biochemical Source Knowledge
Selectivity platform
HMT panel, literature
Selectivity platform number of targets
16
Selectivity remarks
Selective over 15 other lysine, arginine, and DNA methyltransferases; Less than 20% inhibition on 50 kinase targets at 10 µM; Tested in PDSP screen: less than 50% inhibition on 40 7TM targets at 10 µM, greater than 50% inhibition of 4 7TM targets at 10 µM, closest targets: Ki(H3) = 300 nM, Ki(NET) = 1500nM, Ki(Sigma 1) =4700 nM, Ki(Sigma 2) = 65 nM (Radioligand binding assay);
Selectivity Source Knowledge
Compound image
UNC1999
HMT
EZH2@Methyltransferase
IC50 = 2
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000209b
SMILES
CCCc1cc(C)[nH]c(=O)c1CNC(=O)c1cc(-c2ccc(N3CCN(C(C)C)CC3)nc2)cc2c1cnn2C(C)C
InChIKey
DPJNKUOXBZSZAI-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
EZH1, ENX-1, KMT6, KMT6A
Mode of action
Inhibitor
Negative control
UNC2400
Affinity biochemical assay type
Radiometric kinase assay
Affinity Biochemical Source Knowledge
Selectivity platform
HMT panel, literature
Selectivity platform number of targets
16
Selectivity remarks
Selective over 15 other lysine, arginine, and DNA methyltransferases; Less than 20% inhibition on 50 kinase targets at 10 µM; Tested in PDSP screen: less than 50% inhibition on 40 7TM targets at 10 µM, greater than 50% inhibition of 4 7TM targets at 10 µM, closest targets: Ki(H3) = 300 nM, Ki(NET) = 1500nM, Ki(Sigma 1) =4700 nM, Ki(Sigma 2) = 65 nM (Radioligand binding assay);
Selectivity Source Knowledge
Compound image
OICR-9429
E3
WDR5
Kd = 24
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000211b
SMILES
CN1CCN(c2ccc(-c3cccc(CN4CCOCC4)c3)cc2NC(=O)c2c[nH]c(=O)cc2C(F)(F)F)CC1
InChIKey
DJOVLOYCGXNVPI-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
SWD3, CFAP89
Mode of action
Antagonist
Negative control
OICR-0547
Affinity biochemical assay type
Biacore
Affinity Biochemical Source Knowledge
Selectivity platform
Protein methyltransferase panel, literature
Selectivity platform number of targets
22
Selectivity remarks
Screened at 50 µM, >1000-fold selective (IC50 >50 µM); Screened against 8 Methyl-Lysine/Arginine binder (DSF assay), dTm(WDR5) = 18.1 K, closest target: dTm(TDRD3) = 1.8 K; Screened in CEREP panel against 215 targets (kinases, GPCRs, ion channels, transporters) at 1 µM: no kinase with >50% inhibition (IC50 >1 µM)
Selectivity Source Knowledge
Compound image
A-366
HMT
EHMT1/GLP@Methyltransferase
IC50 = 38
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000212b
SMILES
COc1cc2c(cc1OCCCN1CCCC1)N=C(N)C21CCC1
InChIKey
BKCDJTRMYWSXMC-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
Eu-HMTase1, FLJ12879, KIAA1876, bA188C12.1, KMT1D, FLJ40292
Mode of action
Inhibitor
Affinity biochemical assay type
Scintillation proximity assay (SPA)
Affinity Biochemical Source Knowledge
Selectivity platform
Methyltransferade panel, literature
Selectivity platform number of targets
21
Selectivity remarks
Selectivity on methyltransferases measured by scintillation proximity assay (SPA), selective <50 µM
Selectivity Source Knowledge
Compound image
A-366
HMT
EHMT2/G9a@Methyltransferase
IC50 = 3
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000212b
SMILES
COc1cc2c(cc1OCCCN1CCCC1)N=C(N)C21CCC1
InChIKey
BKCDJTRMYWSXMC-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
G9A, Em:AF134726.3, NG36/G9a, KMT1C
Mode of action
Inhibitor
Affinity biochemical assay type
Scintillation proximity assay (SPA)
Affinity Biochemical Source Knowledge
Selectivity platform
Methyltransferade panel, literature
Selectivity platform number of targets
21
Selectivity remarks
Selectivity on methyltransferases measured by scintillation proximity assay (SPA), selective <50 µM
Selectivity Source Knowledge
Compound image
GSK-LSD1
KDM
KDM1A/LSD1@Demethylase
IC50 = 16
Other targets
100 nM
Compound EUbOPEN ID
EUB0000213bCl
SMILES
Cl.Cl.c1ccc([C@@H]2C[C@H]2NC2CCNCC2)cc1
InChIKey
PJFZOGMSPBHPNS-WICJZZOFSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA0601, BHC110, LSD1
Mode of action
Irreversible, mechanism based inhibitor
Affinity biochemical assay type
Enzyme inhibition assay
Affinity Biochemical Source Knowledge
Selectivity platform
CEREP ExpressProfile selectivity/specificity profile
Selectivity platform number of targets
55
Selectivity remarks
Screened against 55 human recombinant receptors at 10 µM, closest targets as % inhibition: 5-HT1A (49%), 5-HAT (74%), dopamine transporter (39%); Screened against 45 other enzymes (GPCRs, kinases, transporters, ion channels, nuclear receptors), >1000-fold selective over other closely related FAD utilizing enzymes (i.e. LSD2, MAO-A, MAO-B)
Selectivity Source Knowledge
Compound image
UNC1215
MBT
L3MBTL3@MBT1
IC50 = 40
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000214b
SMILES
O=C(c1ccc(C(=O)N2CCC(N3CCCC3)CC2)c(Nc2ccccc2)c1)N1CCC(N2CCCC2)CC1
InChIKey
PQOOIERVZAXHBP-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA1798
Mode of action
Antagonist
Negative control
UNC1079
Affinity biochemical assay type
AlphaScreen assay
Affinity Biochemical Source Knowledge
Selectivity platform
Kme reader domain panel, literature
Selectivity platform number of targets
200
Selectivity remarks
Selective; <50% inhibition at 250 mM against 10 HMT targets; >50-fold selective against other members of human MBT family: IC50(L3MBTL1) = 2 µM, IC50(L3MBTL4) = 11 µM, IC50(SFMBT) >30 µM, IC50(MBTD1) = 6 µM (Alphascreen assay); Histone demethylases: < 50% inhibition at 10 mM versus 35 targets; Bromodomains: Tm shift < 0.5 °C at 10 mM versus 12 targets (DSF assay); Kinases: < 15% inhibition at 10 mM versus 49 kinases, closest target as % of contr.: FLT3 (64%); NIMH Psychoactive Drug Screening Program Selectivity Panel (Radioligand binding assay): Ki(M1) = 97 nM, Ki(M2) = 72 nM, Ki(M3) = 890 nM, Ki(M4) = 400 nM, Ki(M5) = 4.3 µM, Ki(Alpha 2C) = 860 nM
Selectivity Source Knowledge
Compound image
GSK343
HMT
EZH2@Methyltransferase
Ki,app = 1.2
IC50 = 174
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000215b
SMILES
CCCc1cc(C)[nH]c(=O)c1CNC(=O)c1cc(-c2ccnc(N3CCN(C)CC3)c2)cc2c1cnn2C(C)C
InChIKey
ULNXAWLQFZMIHX-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
EZH1, ENX-1, KMT6, KMT6A
Mode of action
Inhibitor
Affinity biochemical assay type
Enzyme inhibition assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Immunofluorescence (inhibition of H3K27 methylation in HCC1806 cells)
Selectivity platform
Methyltransferase panel (HotSpot screen, Reaction Biology)
Selectivity platform number of targets
19
Selectivity remarks
Selective over other methyltransferases (radioisotope-based filter binding assays), closest target: IC50(EZH1) = 240 nM, others <60 µM; Screened against 44 receptors and enzymes (internal screening at GSK), closest target: IC50(A1b) = 10 µM, others >10 µM, >100-fold selective
Selectivity Source Knowledge
Compound image
SGC0946
HMT
DOT1L@Methyltransferase
IC50 = 0.3
IC50 = 2.6
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000216b
SMILES
CC(C)N(CCCNC(=O)Nc1ccc(C(C)(C)C)cc1)C[C@H]1O[C@@H](n2cc(Br)c3c(N)ncnc32)[C@H](O)[C@@H]1O
InChIKey
IQCKJUKAQJINMK-HUBRGWSESA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA1814, DOT1, KMT4
Mode of action
Inhibitor
Negative control
SGC0649
Affinity biochemical assay type
Radioactive enzyme assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Westen Blot (reduction of H3K79 dimethylation in A431 cells by DOT1L)
Selectivity platform
Methyltransferase panel, literature
Selectivity platform number of targets
12
Selectivity remarks
Screened against G9a, EHMT1, PRMT3/5, SETDB1, SETD7/8, MLL, EZH2, SUV39H2, SUV420H2; Clean profile in Ricerca selectivity panel at 1 µM against 29 diverse receptors
Selectivity Source Knowledge
Compound image
GSK-J4
KDM
KDM6A/UTX@Demethylase
IC50 = 6600
Other targets
100 nM
Compound EUbOPEN ID
EUB0000217b
SMILES
CCOC(=O)CCNc1cc(N2CCc3ccccc3CC2)nc(-c2ccccn2)n1
InChIKey
WBKCKEHGXNWYMO-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Mode of action
Pro-drug of GSK-J1
Negative control
GSK-J5
Affinity biochemical assay type
AlphaLISA based assay
Affinity Biochemical Source Knowledge
Compound image
L-Moses
Bromodomain
KAT2B@BRD
IC50 = 48
IC50 = 660
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000218c
SMILES
Cc1nnc2c3ccccc3c(N[C@@H](C)[C@H](c3ccccc3)N(C)C)nn12
InChIKey
MSFPLTWUFWOKBX-IFXJQAMLSA-N
NCBI gene ID
UniProt ID
Synonyms
P/CAF, GCN5, GCN5L
Mode of action
Inhibitor
Negative control
D-Moses
Affinity biochemical assay type
BROMOscan assay (DiscoverX)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Competing pull-down assay (full-length PCAF from cell lysates using immobilized L-Moses)
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
48
Selectivity remarks
Screened in DSF assay at 10 µM: highly selective, other targets <2 K; Screened against 130 enzymes (GPCR panel and Eurofins panel) at 10 µM, closest targets: opioid receptors, Ki(MU) = 100 nM, Ki(OPRL1) = 840 nM, Ki(kappa) = 1100 nM, and 5-HAT transporter, Ki = 220 nM
Selectivity Source Knowledge
Compound image
L-Moses
Bromodomain
KAT2A@BRD
IC50 = 220
IC50 = 220
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000218c
SMILES
Cc1nnc2c3ccccc3c(N[C@@H](C)[C@H](c3ccccc3)N(C)C)nn12
InChIKey
MSFPLTWUFWOKBX-IFXJQAMLSA-N
NCBI gene ID
UniProt ID
Synonyms
GCN5, PCAF-b
Mode of action
Inhibitor
Negative control
D-Moses
Affinity biochemical assay type
BROMOscan assay (DiscoverX)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Competing pull-down assay (full-length GCN5 from cell lysates using immobilized L-Moses)
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
48
Selectivity remarks
Screened in DSF assay at 10 µM: highly selective, other targets <2 K; Screened against 130 enzymes (GPCR panel and Eurofins panel) at 10 µM, closest targets: opioid receptors, Ki(MU) = 100 nM, Ki(OPRL1) = 840 nM, Ki(kappa) = 1100 nM, and 5-HAT transporter, Ki = 220 nM
Selectivity Source Knowledge
Compound image
BAY-598
HMT
SMYD2
IC50 0 27
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000220b
SMILES
CCN(C(CO)=O)[C@H]1CN(C(Nc2cccc(c2)OC(F)F)=NC#N)N=C1c1ccc(c(c1)[Cl])[Cl]
InChIKey
OTTJIRVZJJGFTK-SFHVURJKSA-N
NCBI gene ID
UniProt ID
Synonyms
HSKM-B, KMT3C, ZMYND14
Mode of action
Inhibitor
Negative control
BAY-369 (racemate)
Affinity biochemical assay type
Scintillation proximity assay
Affinity Biochemical Source Knowledge
Selectivity platform
KinomeScan (DiscoverX)
Selectivity platform number of targets
456
Selectivity remarks
Screened at 1 µM, closest target as % of contr.: RIOK3 (46%); Screened at 10 µM against Eurofins-Panlabs screen against 68 targets, closest targets as % of inhibition: SLC6A2 (NET, 78%), SLC6A3 (DAT, 71 %); Screened at 1 µM, 10 µM, and 50 µM, against 32 methyltransferases (enzyme activity assays, including closely related family members SMYD3, SUV420H1, and SUV420H2) >100-fold selective; IC50(SMYD3) = 3 μM, IC50(PAR1) = 1.7 µM
Selectivity Source Knowledge
Compound image
BAY-6035
HMT
SMYD3@Methyltransferase
IC50 = 88
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000221b
SMILES
C[C@H]1CC(=O)Nc2cc(C(=O)NCCC3CC3)ccc2N1C(=O)N1CC2CC2C1
InChIKey
CKFRXCBNKKOFGO-IGEOTXOUSA-N
NCBI gene ID
UniProt ID
Synonyms
KMT3E
Mode of action
Peptide-competitive inhibitor
Negative control
BAY-444
Affinity biochemical assay type
Scintillation proximity assay (SPA)
Affinity Biochemical Source Knowledge
Selectivity platform
Methyltransferase panel, literature
Selectivity platform number of targets
34
Selectivity remarks
Screened at 1 µM and 10 µM, highly selective for SMYD3 with no activity on other methyltransferases; Screened against 31 kinases in enzyme assays, closest target T-Fyn (HTRF assay) = 5.71 µM, others >20 µM;
Selectivity Source Knowledge
Compound image
GSK2801
Bromodomain
BAZ2A@BRD
IC50 = 400
Kd = 3981
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000222b
SMILES
CCCOc1ccn2c(C(C)=O)cc(-c3ccccc3S(C)(=O)=O)c2c1
InChIKey
KHWCPNJRJCNVRI-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA0314, TIP5, WALp3
Mode of action
Inhibitor
Negative control
GSK8573
Affinity biochemical assay type
AlphaScreen assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Chemoproteomic competition binding assay (endogenous full-length BAZ2A from HuT78 extracts)
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
46
Selectivity remarks
Screened at 10 µM in DSF assays, dTm(BAZ2A) = 4.1 K, dTm(BAZ2B) = 2.7 K, closest targets: dTm(TAF1L) = 3.4 K, dTm(BRD9) = 2.3 K; In vitro follow up (biolayer interferometry experiment) at 0.2 µM: Kd(BAZ2B) = 0.1 µM, Kd(BRD9) = 1.2 µM, Kd(TAF1L) = 3.19 µM, (ITC experiment): Kd(TAF1L) = 3.2 µM, Kd(BRD9) = 1.1 µM; Screened in CEREP panel against 55 receptors and ion channels at 10 µM, closest target as % of contr.: Melatonin (MT-1) receptor(4%)
Selectivity Source Knowledge
Compound image
GSK2801
Bromodomain
BAZ2B@BRD
IC50 = 430
Kd = 3162
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000222b
SMILES
CCCOc1ccn2c(C(C)=O)cc(-c3ccccc3S(C)(=O)=O)c2c1
InChIKey
KHWCPNJRJCNVRI-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
WALp4
Mode of action
Inhibitor
Negative control
GSK8573
Affinity biochemical assay type
AlphaScreen assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Chemoproteomic competition binding assay (endogenous full-length BAZ2B captured on the GSK2801 affinity matrix from HuT-78 cell lysate)
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
46
Selectivity remarks
Screened at 10 µM in DSF assays, dTm(BAZ2A) = 4.1 K, dTm(BAZ2B) = 2.7 K, closest targets: dTm(TAF1L) = 3.4 K, dTm(BRD9) = 2.3 K; In vitro follow up (biolayer interferometry experiment) at 0.2 µM: Kd(BAZ2B) = 0.1 µM, Kd(BRD9) = 1.2 µM, Kd(TAF1L) = 3.19 µM, (ITC experiment): Kd(TAF1L) = 3.2 µM, Kd(BRD9) = 1.1 µM; Screened in CEREP panel against 55 receptors and ion channels at 10 µM, closest target as % of contr.: Melatonin (MT-1) receptor(4%)
Selectivity Source Knowledge
Compound image
GSK6853
Bromodomain
BRPF1@BRD
IC50 = 7.9
IC50 = 20
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000224d
SMILES
COc1ccccc1C(=O)Nc1cc2c(cc1N1CCCC1)n(C)c(=O)n2C
InChIKey
QCIJLRJBZDBVDB-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
BR140
Mode of action
Inhibitor
Negative control
GSK9311
Affinity biochemical assay type
TR-FRET assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
BROMOscan™ panel (DiscoverX)
Selectivity platform number of targets
35
Selectivity remarks
>1600-fold selective, closest targets: pKd(BRPF2/BRD2) = 6.29, pKd(BRPF3) = 6.00, pKd(BRD9) = 6.00, pKd(BRD7) = 6.09; Screened against 48 ion channels, GPCRs and other enzymes, all pXC50 <5, compound is highly selective;
Selectivity Source Knowledge
Compound image
PFI-4
Bromodomain
BRPF1@BRD
Kd = 13
IC50 = 242
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000224e
SMILES
COc1ccccc1C(O)=Nc1cc2c(cc1N1CCCC1)n(C)c(=O)n2C
InChIKey
QCIJLRJBZDBVDB-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
BR140
Mode of action
Inhibitor
Affinity biochemical assay type
ITC
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
48
Selectivity remarks
Screened in DSF assay at 10 µM, closest target: dTm(CECR2) = 2 K, follow up in Alpha Screen: IC50(CECR2) = 2.32 µM
Selectivity Source Knowledge
Compound image
PFI-4
Bromodomain
BRD1@BRD
Kd = 775
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000224e
SMILES
COc1ccccc1C(O)=Nc1cc2c(cc1N1CCCC1)n(C)c(=O)n2C
InChIKey
QCIJLRJBZDBVDB-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
BRL, BRPF2
Mode of action
Inhibitor
Affinity biochemical assay type
ITC
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
48
Selectivity remarks
Screened in DSF assay at 10 µM, closest target: dTm(CECR2) = 2 K, follow up in Alpha Screen: IC50(CECR2) = 2.32 µM
Selectivity Source Knowledge
Compound image
LLY-283
HMT
PRMT5
IC50 = 22
IC50 = 25
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000226b
SMILES
Nc1ncnc2c1ccn2[C@@H]1O[C@H]([C@H](O)c2ccccc2)[C@@H](O)[C@H]1O
InChIKey
WWOOWAHTEXIWBO-QFRSUPTLSA-N
NCBI gene ID
UniProt ID
Synonyms
HRMT1L5, HSL7, IBP72, JBP1, SKB1, SKB1Hs
Mode of action
Inhibitor
Negative control
LLY-284
Affinity biochemical assay type
Radioactivity-based assay (measuring transfer of the methyl group from 3H-SAM to peptide substrate)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Western Blot (monitoring SmBB-Rme2s levels in MCF7 cells)
Selectivity platform
Methyltransferase panel, literature
Selectivity platform number of targets
32
Selectivity remarks
Screened at 1 µM and 10 µM, selective over other targets including closely related arginine methyltransferases PRMT4, PRMT6, PRMT7;
Selectivity Source Knowledge
Compound image
IOX2
Hydroxylase
EGLN1
IC50 0 22
Other targets set
1 µM
Compound EUbOPEN ID
EUB0000227d
SMILES
CC(CS(=O)(N[C@H]1CCC(N(C2=CC3=C(C(C)=CC(N3C)=O)C=C2)[C@@H]1C4=CC=C(C=C4)Cl)=O)=O)C
InChIKey
LVDRREOUMKACNJ-BKMJKUGQSA-N
NCBI gene ID
UniProt ID
Synonyms
C1orf12, ECYT3, HALAH, HIF-PH2, HIFPH2, HPH-2, HPH2, PHD2, SM20, ZMYND6
Mode of action
Inhibitor
Negative control
No control available for probe
Affinity biochemical assay type
AlphaScreen assay
Affinity Biochemical Source Knowledge
Selectivity platform
CEREP panel (receptors and ion channels)
Selectivity platform number of targets
55
Selectivity remarks
Screened at 10 µM, closest targets as % control binding: Cl-channel, GABA gated (70%), Adenosine A1 (82%); Selectivity against histone demethylases, in-vitro potency (AlphaScreen assay): IC50(KDM4A) = 100 µM, IC50(KDM4C) = 100 µM, IC50(KDM4E) >100 µM, IC50(KDM6B) >100 µM, IC50(KDM3A) >100 µM, IC50(KDM2A) = 52 µM, IC50(KDM5C) = 159 µM
Selectivity Source Knowledge
Compound image
SGC-GAK-1N
Protein Kinase
GAK
IC50 > 5000
Kinase set
1 µM
Compound EUbOPEN ID
EUB0000229b
SMILES
COc1cc(N(C)c2ccnc3ccc(C(F)(F)F)cc23)cc(OC)c1OC
InChIKey
PVTQCCFMFWASHK-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
DNAJC26
Mode of action
Negative control for SGC-GAK-1
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Affinity on-target cellular source knowledge
Compound image
TP-064
HMT
CARM1
IC50 < 10
IC50 = 43
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000230b
SMILES
CNCCN1CCC(c2cc(CN(C)C(=O)c3cccc(Oc4ccccc4)c3)ccn2)CC1
InChIKey
VUIITYLFSAXKIQ-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
PRMT4
Mode of action
Inhibitor
Negative control
TP-064N
Affinity biochemical assay type
Scintillation proximity assay (SPA)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Western Blot (dimethylation of MED12, Med12me2a/Med12, in HEK293T cells)
Affinity on-target cellular source knowledge
Selectivity platform
Methyltransferase screen (Scintillation proximity assays)
Selectivity platform number of targets
32
Selectivity remarks
In-vitro potencies of closest targets: IC50(PRMT6) = 1.3 µM, IC50(PRMT8) = 8.1 µM, IC50(PRMT4) <0.01 µM, IC50(PRMT1) >10 µM, IC50(PRMT3) >10 µM, IC50(PRMT5) >10 µM, IC50(PRMT7) >10 µM, IC50(PRMT9) >10 µM, IC50(G9a) >10 µM, IC50(GLP) >10 µM, IC50(SETDB1) >10 µM, IC50(SUV39H1) >10 µM, IC50(SUV39H2) >10 µM, IC50(PRDM9) >10 µM, IC50(SETD) >10 µM, IC50(SETD7) >10 µM, IC50(MLL1) >10 µM, IC50(MLL3) >10 µM, IC50(SETD2) >10 µM, IC50(PRC2) >10 µM, IC50(SUV420H1) >10 µM, IC50(SUV420H2) >10 µM, IC50(SMYD2) >10 µM, IC50(SMYD3) >10 µM, IC50(DNMT1) >10 µM, IC50(DNMT3A/3L) >10 µM, IC50(DNMT3B/3L) >10 µM, IC50(NSD1) >10 µM, IC50(NSD2) >10 µM, IC50(NSD3) >10 µM, IC50(ASH1L) >10 µM, IC50(DOT1L) >10 µM
Selectivity Source Knowledge
Compound image
TP-472
Bromodomain
BRD9@BRD
Kd = 33
EC50 = 320
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000231c
SMILES
CC(=O)c1cc(-c2cc(C(=O)NC3CC3)ccc2C)c2ncccn12
InChIKey
RPBMXJHQYJLPDN-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
FLJ13441
Mode of action
Inhibitor
Negative control
TP-472N
Affinity biochemical assay type
ITC
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
Eurofins CEREP Diversity Profiling
Selectivity platform number of targets
96
Selectivity remarks
Screened against 71 receptors and ion channels and against 25 other enzymes at 10 µM, closest targets as % of contr.: Adenosine A1 receptor (14%), Benzodiazepine receptor (47%), PDE2A1 (h) (25%), PDE3A (h) (48%) and PDE4D2 (h) (28%); Selectivity >30 fold over all other bromodomain family members except BRD7: Kd(BRD7) = 340 nM (ITC)
Selectivity Source Knowledge
Compound image
TH-257
Protein Kinase
LIMK1
IC50 = 84
IC50 = 250
Kinase set
1 µM
Compound EUbOPEN ID
EUB0000232b
SMILES
CCCCN(Cc1ccccc1)C(=O)c1ccc(S(=O)(=O)Nc2ccccc2)cc1
InChIKey
VNCIWNGCMAKKEO-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
LIMK
Mode of action
Allosteric inhibitor
Negative control
TH-263
Affinity biochemical assay type
RapidFire MS assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
KinomeScan (DiscoverX)
Selectivity platform number of targets
448
Selectivity remarks
Screened at 1 µM, no significant activities below 50%
Selectivity Source Knowledge
Compound image
TH-257
Protein Kinase
LIMK2
IC50 = 39
IC50 = 150
Kinase set
1 µM
Compound EUbOPEN ID
EUB0000232b
SMILES
CCCCN(Cc1ccccc1)C(=O)c1ccc(S(=O)(=O)Nc2ccccc2)cc1
InChIKey
VNCIWNGCMAKKEO-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Mode of action
Allosteric inhibitor
Negative control
TH-263
Affinity biochemical assay type
RapidFire MS assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
KinomeScan (DiscoverX)
Selectivity platform number of targets
448
Selectivity remarks
Screened at 1 µM, no significant activities below 50%
Selectivity Source Knowledge
Compound image
MRK-740
HMT
PRDM9
IC50 = 80
IC50 = 800
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000234b
SMILES
COc1cc(OC)cc(-c2noc(N3CCN(C)C4(CCN(c5ccnc(C)c5)CC4)C3)n2)c1
InChIKey
NZYTZRHHBAJPKN-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
KMT8B, MEISETZ, MSBP3, PFM6, ZNF899
Mode of action
Inhibitor
Negative control
MRK-740-NC
Affinity biochemical assay type
Scintillation proximity assay (SPA)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Western Blot (inhibition of PRDM9-dependent trimethylation of ectopic H3K4 in HEK293T cells)
Selectivity platform
Methyltransferase panel, literature
Selectivity platform number of targets
45
Selectivity remarks
Screened in DSF assay at 10µM, dTm(PRDMT9) = 5.2K, closest target dTm(PRDMT7) = 5.0K; Screened against 108 enzymes and receptors (Eurofins Panlabs Discovery Services), closest targets>50% at 10µM: MOR, A2AB, M2, H3; In vitro follow up with GloSensor assay (PDSP screen): EC50>10µM for all targets
Selectivity Source Knowledge
Compound image
SGC3027N
HMT
PRMT7
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000236b
SMILES
CC1=C(C)C(=O)C(C(C)(C)CC(=O)N(CCCCSC[C@H]2O[C@@H](n3cnc4c(N)ncnc43)[C@@H]3OC(C)(C)O[C@H]23)Cc2cccc(-c3ccc(Cl)cc3)c2)=C(C)C1=O
InChIKey
FJBPSCVGHZASPG-LJVHFRCJSA-N
NCBI gene ID
UniProt ID
Synonyms
FLJ10640, KIAA1933
Mode of action
Negative control for SGC3027
Affinity Biochemical Source Knowledge
Compound image
TL4-12
Protein Kinase
MAP4K2
IC50 = 37
Kinase set
1 µM
Compound EUbOPEN ID
EUB0000238b
SMILES
CNc1cc(Oc2cc(C(=O)Nc3cc(N4CCN(C)CC4)cc(C(F)(F)F)c3)ccc2C)ncn1
InChIKey
HXKJJIMUMNPQQY-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
GCK, BL44
Mode of action
Inhibitor
Affinity biochemical assay type
Enzymatic inhibition assay
Affinity Biochemical Source Knowledge
Selectivity platform
KiNativ profiling (A375 live cells treatment assays)
Selectivity platform number of targets
220
Selectivity remarks
Screened at 1 µM, closest targets as % inhibition: ABL1(49%) and ABL2 (49%);
Selectivity Source Knowledge
Compound image
NVS-MALT1
Protease
MALT1
IC50 = 2.4
Other targets
1 µM
Compound EUbOPEN ID
EUB0000239b
SMILES
CO[C@@H](C)c1c(Nc2ccc([C@H](N(C)C(=O)C3CCS(=O)(=O)CC3)C(F)(F)F)cc2)cnc2cc(Cl)nn12
InChIKey
NVGROBHDOYRPAN-FPTDNZKUSA-N
NCBI gene ID
UniProt ID
Synonyms
MALT1, MLT
Mode of action
Allosteric inhibitor
Negative control
NVS-MALT1-C
Affinity biochemical assay type
TR-FRET assay (high salt)
Affinity Biochemical Source Knowledge
Selectivity platform
Protease assay, literature
Selectivity platform number of targets
16
Selectivity remarks
Screened at 10 µM, no cross reactivity among proteases owing to allosteric mechanism; Screened against 468 kinases(KinomeScan DiscoverX) at 1 µM, closest targets as % contr.: FLT3(N841I) (23%), CDK8 (39%), HIPK1 (40%), NEK3 (40%), MAST1 (43%), PIK3CA(E545K) (48%); Clean profile in screen against 45 GPCRs (PDSP screen) at 10 µM; Screened in kinase panel against 50 targets at 10 µM, closest targets: IC50(FLT3) = 3.5 µM; Screened against panel of 110 receptors, ion channels, enzymes and transporters, at 10 µM, closest target as % of inhibition: adenosine transporter AdT (52%);
Selectivity Source Knowledge
Compound image
BAY-899
GPCR
LHCGR
IC50 = 185
GPCR set
1 µM
Compound EUbOPEN ID
EUB0000240b
SMILES
O=C(Nc1cnc(Oc2ccc(F)cc2)nc1)N1CCc2ncccc2[C@@H]1c1ccc(F)cc1
InChIKey
VKQBTIMLSDGNLG-QHCPKHFHSA-N
NCBI gene ID
UniProt ID
Synonyms
LHR, LCGR, LGR2, ULG5
Mode of action
Inhibitor
Negative control
BAY-897
Affinity on-target cellular assay type
Cell-based assay (LH Antagonism)
Selectivity platform
GPCR panel (Eurofins, Bayer)
Selectivity platform number of targets
25
Selectivity remarks
Screened at 10 µM, closest targets in the GPCR scan: Ki(SIGMAR1) = 1431.53 nM, Ki(TMEM97) = 2051.16 nM, Ki(OPRK1) = 7634.84 nM; hTSH antagonism: IC50 = 24 µM; hFSH antagonism: IC50 > 16 µM; Screened against 468 kinases (KinomeScan (DiscoverX)) at 1 µM, closest target as % of contr.: CDKL2 (33%)
Selectivity Source Knowledge
Compound image
ABBV-744
Bromodomain
BRD4@BD2
Ki 0 1.6
IC50 0 27.5
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000246b
SMILES
CCNC(=O)c1cc2c(-c3cc(C(C)(C)O)ccc3Oc3c(C)cc(F)cc3C)cn(C)c(=O)c2[nH]1
InChIKey
OEDSFMUSNZDJFD-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
HUNKI, MCAP, CAP, HUNK1
Mode of action
Inhibitor
Affinity biochemical assay type
TR-FRET binding assay (BD2)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (BD2)
Affinity on-target cellular source knowledge
Selectivity platform
BROMOScan (Discoverx)
Selectivity platform number of targets
22
Selectivity remarks
290-fold selectivity relative to the BD1 domains of BRD2, BRD3 and BRD4; Clean in screen against 75 kinases
Selectivity Source Knowledge
Compound image
ABBV-744
Bromodomain
BRD2@BD2
Ki 0 4.6
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000246b
SMILES
CCNC(=O)c1cc2c(-c3cc(C(C)(C)O)ccc3Oc3c(C)cc(F)cc3C)cn(C)c(=O)c2[nH]1
InChIKey
OEDSFMUSNZDJFD-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA9001, RING3, D6S113E, NAT, FSRG1
Mode of action
Inhibitor
Affinity biochemical assay type
TR-FRET binding assay (BD2)
Affinity Biochemical Source Knowledge
Selectivity platform
BROMOScan (Discoverx)
Selectivity platform number of targets
22
Selectivity remarks
290-fold selectivity relative to the BD1 domains of BRD2, BRD3 and BRD4; Clean in screen against 75 kinases
Selectivity Source Knowledge
Compound image
ABBV-744
Bromodomain
BRD3@BD2
Ki 0 4.9
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000246b
SMILES
CCNC(=O)c1cc2c(-c3cc(C(C)(C)O)ccc3Oc3c(C)cc(F)cc3C)cn(C)c(=O)c2[nH]1
InChIKey
OEDSFMUSNZDJFD-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
RING3L, ORFX, KIAA0043
Mode of action
Inhibitor
Affinity biochemical assay type
TR-FRET binding assay (BD2)
Affinity Biochemical Source Knowledge
Selectivity platform
BROMOScan (Discoverx)
Selectivity platform number of targets
22
Selectivity remarks
290-fold selectivity relative to the BD1 domains of BRD2, BRD3 and BRD4; Clean in screen against 75 kinases
Selectivity Source Knowledge
Compound image
ABBV-744
Bromodomain
BRDT@BD2
Ki 0 1
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000246b
SMILES
CCNC(=O)c1cc2c(-c3cc(C(C)(C)O)ccc3Oc3c(C)cc(F)cc3C)cn(C)c(=O)c2[nH]1
InChIKey
OEDSFMUSNZDJFD-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
BRD6, CT9
Mode of action
Inhibitor
Affinity biochemical assay type
TR-FRET binding assay (BD2)
Affinity Biochemical Source Knowledge
Selectivity platform
BROMOScan (Discoverx)
Selectivity platform number of targets
22
Selectivity remarks
290-fold selectivity relative to the BD1 domains of BRD2, BRD3 and BRD4; Clean in screen against 75 kinases
Selectivity Source Knowledge
Compound image
I-BRD9 (GSK602)
Bromodomain
BRD9@BRD
IC50 = 50.1
IC50 = 79.4
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000247b
SMILES
CCn1cc(-c2cccc(C(F)(F)F)c2)c2sc(C(N)=NC3CCS(=O)(=O)CC3)cc2c1=O
InChIKey
WRUWGLUCNBMGPS-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
FLJ13441
Mode of action
Inhibitor
Affinity biochemical assay type
Time-Resolved FRET assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Western Blot (chemoproteomic competition binding assay in HUT-78 cell lysate)
Selectivity platform
BROMOscan™ (DiscoverX)
Selectivity platform number of targets
34
Selectivity remarks
>70-fold selective over other bromodomains tested, closest targets: Kd(CECR2) = 140 nM, Kd(BRD7) = 390 nM, Kd(CREBBP) = 740 nM, Kd(EP300) = 770 nM, others >1.5 µM; Inactive against a panel of 49 human receptors, ion channels, kinases and other enzymes
Selectivity Source Knowledge
Compound image
BAY-885
Protein Kinase
MAPK7
IC50 = 35
IC50 = 115
Kinase set
1 µM
Compound EUbOPEN ID
EUB0000250b
SMILES
CN1CCN(c2cnc3c(C4CCN(C(=O)c5ccc(OC(F)(F)F)cc5N)CC4)ncnc3c2)CC1
InChIKey
QXURFIGBRGWPQD-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
BMK1, ERK5
Mode of action
Inhibitor
Negative control
BAY-693
Affinity biochemical assay type
TR-FRET assay (250 µM ATP)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Cellular luciferase reporter assay (using the SN12C-MEF2-luc cell line and ONE-Glo)
Selectivity platform
KinomeScan (Eurofins)
Selectivity platform number of targets
358
Selectivity remarks
Screened at 1 µM, closest targets as % of contr.: FER (38%), EPHB3 (42%), EPHA5 (57%); Screened against 468 kinases (KinomeScan DiscoverX) at 1 µM, closest targets as % of contr.: EPHB6 (18%), EGFR(S752-I759del) (38%), LTK (49%); Screened against 45 GPCR targets (PDSP screen) at 10 µM, closest target: Ki(SIGMAR1) = 2.50 µM
Selectivity Source Knowledge
Compound image
BAY-588
SLC
SLC2A1
Negative Control
Ion Channel
1 µM
Compound EUbOPEN ID
EUB0000251b
SMILES
Cc1c(NC(=O)c2cc(C(N)=O)nc3cc(F)ccc23)c(C(F)(F)F)nn1Cc1ccc(C(C)(C)C)cc1
InChIKey
DNGZBWVQLFNTRT-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
CSE DYT17 DYT18 DYT9 EIG12 GLUT GLUT-1 GLUT1 GLUT1DS HTLVR PED SDCHCN
Mode of action
Negative control for BAY-876
Affinity Biochemical Source Knowledge
Compound image
MSD-M1PAM
GPCR
CHRM1
Potentiation inflection oint = 136
GPCR set
1 µM
Compound EUbOPEN ID
EUB0000252b
SMILES
N#CC1(c2ccccn2)CCN(Cc2cc(C(=O)O)c(=O)n3ccccc23)CC1
InChIKey
RJTJRVASUFIDQM-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Mode of action
Positive allosteric modulator
Negative control
CHRM1
Affinity on-target cellular assay type
Fold potentiation assay (addition of EC20 acetylcholine; in human M1 expressing Chinese hamster ovary (CHO) cells; using calcium mobilization readout on a fluorometric imaging plate reader (FLIPR384))
Selectivity platform
GPCR screen (PDSP)
Selectivity platform number of targets
45
Selectivity remarks
Screened at 10 µM, > 700-fold selective for CHRM2, CHRM3, CHRM4; Screened against 468 kinases (KinomeScan DiscoverX) at 1 µM, closest targets as % of contr.: PIK3CB (36%), TGFBR1 (41%), BLK (49%); Panlabs screen at 10 µM against 140 targets, closest target: IC50( PTPN2) = 10 µM;
Selectivity Source Knowledge
Compound image
NVS-BPTF-1
Bromodomain
BPTF@BRD
Kd = 71
IC50 = 16
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000253b
SMILES
Cc1c(Nc2ccc(S(=O)(=O)N3CCN(C)CC3)cc2F)nc2ccc(-c3cnn(C4CC4)c3)cn2c1=O
InChIKey
JYTISQGEFSHUIR-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
FAC1, NURF301
Mode of action
Inhibitor
Negative control
NVS-BPTF-C
Affinity biochemical assay type
BioLayer Interferometry assay (BLI)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
BROMOscan
Selectivity platform number of targets
32
Selectivity remarks
Screened at 1 µM, closest targets: Kd(CERC2) = 66 nM, Kd(GCN5L2) = 62 nM, Kd(PCAF) = 74 nM; Follow-up IC50s in cellular NanoBRET assay: IC50(CERC2/GCN5L2/PCAF) >10 µM; DSF screen against 48 human bromodomains, dTm(BPTF) = 6.16 K, closest targets: dTm(CERC2) = 2.48 K, dTm(BRD7) = 1.95 K, dTM(PCAF) = 1.53 K; Screened in NIBR principial panel against 12 GPCRs, 3 nuclear receptors, 3 transporters and 7 other enzymes, closest tagets: IC50(Ad3) = 4.9 µM, IC50(D3) = 3.5 µM, IC50(H3) = 4 µM, others >30 µM, Screened in NIBR kinase panel against 48 kinases, no target with IC50 <30 µM;
Selectivity Source Knowledge
Compound image
NVS-BPTF-C
Bromodomain
BPTF@BRD
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000254b
SMILES
Cc1c(Nc2ccc(S(=O)(=O)N3CCN(C)CC3)cc2F)nc2ccc(Nc3cnn(C4CC4)c3)cn2c1=O
InChIKey
BFSKPRUNBBMNCF-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
FAC1, NURF301
Mode of action
Negative control for NVS-BPTF-1
Affinity Biochemical Source Knowledge
Compound image
TP-064N
HMT
CARM1
IC50 = 2500
IC50 > 10000
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000255b
SMILES
COCCN1CCC(c2cc(CN(C)C(=O)c3cccc(Oc4ccccc4)c3)ccn2)CC1
InChIKey
IQCHVVCQDZOLHI-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
PRMT4
Mode of action
Negative control for TP-064
Affinity biochemical assay type
Scintillation proximity assay (SPA)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Western Blot (dimethylation of MED12, Med12me2a/Med12, in HEK293T cells)
Affinity on-target cellular source knowledge
Selectivity platform
Methyltransferase screen (Scintillation proximity assays)
Selectivity platform number of targets
32
Selectivity remarks
In-vitro potencies of closest targets: IC50(PRMT6) = 1.3 µM, IC50(PRMT8) = 8.1 µM, IC50(PRMT4) <0.01 µM, IC50(PRMT1) >10 µM, IC50(PRMT3) >10 µM, IC50(PRMT5) >10 µM, IC50(PRMT7) >10 µM, IC50(PRMT9) >10 µM, IC50(G9a) >10 µM, IC50(GLP) >10 µM, IC50(SETDB1) >10 µM, IC50(SUV39H1) >10 µM, IC50(SUV39H2) >10 µM, IC50(PRDM9) >10 µM, IC50(SETD) >10 µM, IC50(SETD7) >10 µM, IC50(MLL1) >10 µM, IC50(MLL3) >10 µM, IC50(SETD2) >10 µM, IC50(PRC2) >10 µM, IC50(SUV420H1) >10 µM, IC50(SUV420H2) >10 µM, IC50(SMYD2) >10 µM, IC50(SMYD3) >10 µM, IC50(DNMT1) >10 µM, IC50(DNMT3A/3L) >10 µM, IC50(DNMT3B/3L) >10 µM, IC50(NSD1) >10 µM, IC50(NSD2) >10 µM, IC50(NSD3) >10 µM, IC50(ASH1L) >10 µM, IC50(DOT1L) >10 µM
Selectivity Source Knowledge
Compound image
GSK4027
Bromodomain
KAT2B@BRD
Ki = 1.4
IC50 = 60
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000256b
SMILES
CN1C[C@H](Nc2cnn(C)c(=O)c2Br)C[C@H](c2ccccc2)C1
InChIKey
VZAFGXCWAWRULT-UONOGXRCSA-N
NCBI gene ID
UniProt ID
Synonyms
P/CAF, GCN5, GCN5L
Mode of action
Inhibitor
Negative control
GSK4028
Affinity biochemical assay type
Bromoscan assay(DiscoverX)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
BROMOscan panel (DiscoverX)
Selectivity platform number of targets
34
Selectivity remarks
Closest targets: Ki(BRPF3) = 100 nM, Kd(BRD1) = 110 nM, Kd(FALZ) = 130 nM, Kd(BRPF1) = 140 nM, Kd(BAZB) = 840 nM, Kd(BRD7) = 1500 nM, Kd(BRD9) = 1400 nM, others >20 µM; Screened against 50 receptors, ion channels and other enzymes (internal GSK panel), closest target: XC50(AChEase) = 3.2 µM, others >4 µM
Selectivity Source Knowledge
Compound image
GSK4027
Bromodomain
KAT2A@BRD
Ki = 1.4
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000256b
SMILES
CN1C[C@H](Nc2cnn(C)c(=O)c2Br)C[C@H](c2ccccc2)C1
InChIKey
VZAFGXCWAWRULT-UONOGXRCSA-N
NCBI gene ID
UniProt ID
Synonyms
GCN5, PCAF-b
Mode of action
Inhibitor
Negative control
GSK4028
Affinity biochemical assay type
Bromoscan assay(DiscoverX)
Affinity Biochemical Source Knowledge
Selectivity platform
BROMOscan panel (DiscoverX)
Selectivity platform number of targets
34
Selectivity remarks
Closest targets: Ki(BRPF3) = 100 nM, Kd(BRD1) = 110 nM, Kd(FALZ) = 130 nM, Kd(BRPF1) = 140 nM, Kd(BAZB) = 840 nM, Kd(BRD7) = 1500 nM, Kd(BRD9) = 1400 nM, others >20 µM; Screened against 50 receptors, ion channels and other enzymes (internal GSK panel), closest target: XC50(AChEase) = 3.2 µM, others >4 µM
Selectivity Source Knowledge
Compound image
MS094
HMT
CARM1
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000261b
SMILES
CC(C)Oc1ccc(-c2c[nH]cc2CN(C)CCO)cc1
InChIKey
GNAKYUUZAXUXKB-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
PRMT4
Mode of action
Negative control for MS023
Affinity Biochemical Source Knowledge
Compound image
MS094
HMT
PRMT1
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000261b
SMILES
CC(C)Oc1ccc(-c2c[nH]cc2CN(C)CCO)cc1
InChIKey
GNAKYUUZAXUXKB-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
HCP1, ANM1
Mode of action
Negative control for MS023
Affinity Biochemical Source Knowledge
Compound image
MS094
HMT
PRMT3
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000261b
SMILES
CC(C)Oc1ccc(-c2c[nH]cc2CN(C)CCO)cc1
InChIKey
GNAKYUUZAXUXKB-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Mode of action
Negative control for MS023
Affinity Biochemical Source Knowledge
Compound image
MS094
HMT
PRMT8
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000261b
SMILES
CC(C)Oc1ccc(-c2c[nH]cc2CN(C)CCO)cc1
InChIKey
GNAKYUUZAXUXKB-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Mode of action
Negative control for MS023
Affinity Biochemical Source Knowledge
Compound image
A-1155463
Apoptosis regulator
BCL2L1
IC50 = 0.55
Other targets
1 µM
Compound EUbOPEN ID
EUB0000262b
SMILES
CN(C)CC#Cc1ccc(OCCCc2sc(N3CCc4cccc(C(=O)Nc5nc6ccccc6s5)c4C3)nc2C(=O)O)c(F)c1
InChIKey
SOYCFODXNRVBTI-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
BCL2L1, BCL2L, BCLX
Mode of action
Inhibitor
Negative control
A-1107969
Affinity biochemical assay type
TR-FRET assay
Affinity Biochemical Source Knowledge
Selectivity platform
CEREP panel (Eurofins)
Selectivity platform number of targets
71
Selectivity remarks
Screened at 10 µM (binding assay), closest targets as % inhibition: PPARG (99.1%), CCKAR (98.9%), UTS2R (94.9%), OPRD1 (77.9%), MAOA (74.5%), ADORA3 (71.6%), HRH1 (69.2%), PTGS2 (62.2%); Screened against 468 kinase targets (KinomeScan DiscoverX) at 1 µM, closest targets as % contr.: AURKC (9%), MARK3 (38%); Screened against 45 GPCR targets (PDSP screen) at 10 µM, closest targets: Ki(SIGMAR1) = 136.4 nM, Ki(GABA/PBR) = 793.96 nM, Ki(TMEM97) = 806.12 nM, Ki(HTR3A) = 1142.6 nM, Ki(HRH3) = 1806.76 nM, Ki(OPRD1) = 2118.36 nM; Screened in Eurofins-Cerep panel against 7 targets at 10 µM (enzymes and uptake assays): clean profile;
Selectivity Source Knowledge
Compound image
A-1211212
Apoptosis regulator
BCL2
IC50 = 1.4
Other targets
1 µM
Compound EUbOPEN ID
EUB0000263b
SMILES
CO[C@H]1CC[C@H](CNc2ccc(S(=O)(=O)NC(=O)c3ccc(N4CCN(CC5=C(c6ccc(Cl)cc6)CC(C)(C)CC5)CC4)cc3Oc3cnc4[nH]ccc4c3)cc2[N+](=O)[O-])CC1
InChIKey
CSBKUBOVPUXFLO-MAVVKCOWSA-N
NCBI gene ID
UniProt ID
Synonyms
BCL2
Mode of action
Inhibitor
Negative control
A-1210227
Affinity biochemical assay type
TR-FRET assay
Affinity Biochemical Source Knowledge
Selectivity platform
CEREP panel (Eurofins)
Selectivity platform number of targets
71
Selectivity remarks
Screened at 10 µM (binding assays), closest targets as % inhibition: Ca2+ channel (L, dihydropyridine site); Screened against 468 kinases (KinomeScan DiscoverX) at 1 µM, closest targets as % of contr.: HIPK4 (4.4%), MAPK12 (47%); Screened against 45 GPCR targets (PDSP screen) at 10 µM, closest target: Ki(TMEM97) = 1491.08 nM; Screened in Eurofins-Cerep panel against 7 targets at 10 µM (enzymes and uptake assays): clean profile;
Selectivity Source Knowledge
Compound image
A-1596584
ABC transporter
CFTR
Negative Control
Ion Channel
1 µM
Compound EUbOPEN ID
EUB0000264b
SMILES
COc1ccc2c(c1)O[C@H](C[C@H]2NC(C1(CC1)c1ccc2c(c1)OC(O2)(F)F)=O)c1ccc(c(c1)OC)OC
InChIKey
KDOQEEMQPHIANX-NFBKMPQASA-N
NCBI gene ID
UniProt ID
Synonyms
CFTR, ABCC7
Mode of action
Negative control for A-1596586
Affinity Biochemical Source Knowledge
Compound image
GSK-J5
KDM
KDM6A/UTX@Demethylase
Negative Control
Other targets
100 nM
Compound EUbOPEN ID
EUB0000265b
SMILES
CCOC(=O)CCNc1cc(N2CCc3ccccc3CC2)nc(-c2cccnc2)n1
InChIKey
LQPGVGSKBNXQDU-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Mode of action
Negative control for GSK-J5
Affinity Biochemical Source Knowledge
Compound image
GSK8573
Bromodomain
BAZ2A@BRD
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000267b
SMILES
CCCOc1ccn2c(C(C)=O)cc(-c3cccc(OC)c3)c2c1
InChIKey
QQBGNWWJANJWNY-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA0314, TIP5, WALp3
Mode of action
Negative control for GSK2801
Affinity Biochemical Source Knowledge
Compound image
GSK8573
Bromodomain
BAZ2B@BRD
Negative Control
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000267b
SMILES
CCCOc1ccn2c(C(C)=O)cc(-c3cccc(OC)c3)c2c1
InChIKey
QQBGNWWJANJWNY-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
WALp4
Mode of action
Negative control for GSK2801
Affinity Biochemical Source Knowledge
Compound image
BI-9466
HMT
NSD3@PWWP1
IC50 = 120000
IC50 > 10000
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000270b
SMILES
Cc1cc(CN)cc(C)c1-c1ncn(C)c1-c1cncn1C
InChIKey
SFZHMKDAVPIXRB-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
FLJ20353, WHISTLE, KMT3F
Mode of action
Negative control for BI-9321
Affinity biochemical assay type
TR-FRET binding assay (NSD3-PWWP1)
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (Nluc-NSD3-PWWP1 fusion protein in U2OS cells)
Affinity on-target cellular source knowledge
Selectivity platform
PWWP, WD40, and Tudor domain panel (DSLS measurements, literature)
Selectivity platform number of targets
20
Selectivity remarks
Screened at 500 µM against 10 PWWP, 4 WD40, 3 Tudor and 4 MBT domains of 20 proteins (DSLS measurements): dTagg(NSD3@PWWP1) = 0.7 K, dTagg(NSD2@PWWP1) = 0.1 K, dTagg(NSD3@PWWP2) = 0.5 K, dTagg(BRPF1@PWWP) = 0.0 K, dTagg(BRD1@PWWP) = -2.2 K, dTagg(BRPF3@PWWP) = 0.3 K, dTagg(ZCWPW1@PWWP) = 0.0 K, dTagg(DNMT3A@PWWP1) = -0.1 K, dTagg(DNMT3B@PWWP1) = 0.0 K, dTagg(MSH6@PWWP) = -0.2 K, dTagg(WDR20@PWWP) = 0.0 K, dTagg(WDR5@PWWP) = - 0.7 K, dTagg(WDR48@PWWP) = 0.1 K, dTagg(EED@PWWP) = 0.2 K, dTagg(53BP1@PWWP1) = 0.1 K, dTagg(SETDB1@PWWP) = 0.9 K, dTagg(TDRD3@PWWP) = 0.8 K, dTagg(L3MBTL3@PWWP) = 0.2 K, dTagg(L3MBTL1@PWWP1) = 0.2 K, dTagg(SCML2@PWWP1) = 0.1 K (https://www.nature.com/articles/s41589-019-0310-x); Screened at 1 µM and 10 µM against 34 protein, RNA and DNA methyltransferases and EP300 (acetyltransferase): highly selective with >80% remaining activity on all proteins tested (https://www.nature.com/articles/s41589-019-0310-x); Screened at 100 µM against 48 bromodomains (DSF assay): clean selectivity profile with all targets dTm <2K (https://www.nature.com/articles/s41589-019-0310-x)
Selectivity Source Knowledge
Compound image
SGC6870
HMT
PRMT6
IC50 = 77
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000271b
SMILES
Cc1cc(C)cc([C@@H]2c3cc(C)ccc3NC(=O)CN2C(=O)c2ccc(Br)s2)c1
InChIKey
NIPTUMFVYBXSMZ-JOCHJYFZSA-N
NCBI gene ID
UniProt ID
Synonyms
FLJ10559
Mode of action
Allosteric inhibitor
Negative control
SGC6870N
Affinity biochemical assay type
Radioactive biochemical assay
Affinity Biochemical Source Knowledge
Selectivity platform
Methyltransferase screen (radiometric assays)
Selectivity platform number of targets
32
Selectivity remarks
Screened at 1 µM and 10 µM, clean against a panel of 8 PRMTs, 21 protein lysine methyltransferases, 3 DNA methyltransferases, and one RNA methyltransferase, targets as % of activity in the screen at 1 µM: PRMT6 (17%), PRMT1 (>90%), PRMT3 (>90%), PRMT4 (>90%), PRMT5 (>90%), PRMT7 (>90%), PRMT8 (>90%), PRMT9 (>90%), G9a (>90%), GLP (>90%), SETDB1 (>90%), SUV39H1 (>90%), SUV39H2 (>90%), SUV420H1 (>90%), SUV420H2 (>90%), SETD7 (>90%), SETD8 (>90%), MLL1 (>90%), MLL3 (>90%), PRDM9 (>90%), PRC2 (>90%), SETD2 (>90%), SMYD2 (>90%), SMYD3 (>90%), BCDN3D (>90%), DNMT1 (>90%), DNMT3A/3L (>90%), DNMT3B/3L (>90%), DOT1L (>90%), ASH1L (>90%), NSD1 (>90%), NSD2(>90%),NSD3(>90%); Targets as % of activity in the screen at 10 µM: PRMT6 (8%), PRMT1 (>90%), PRMT3 (>90%), PRMT4 (>90%), PRMT5 (>90%), PRMT7 (>90%), PRMT8 (>90%), PRMT9 (>90%), G9a (>90%), GLP (>90%), SETDB1 (>90%), SUV39H1 (>90%), SUV39H2 (>90%), SUV420H1 (>90%), SUV420H2 (>90%), SETD7 (>90%), SETD8 (>90%), MLL1 (>90%), MLL3 (>90%), PRDM9 (>90%), PRC2 (>90%), SETD2 (>90%), SMYD2 (>90%), SMYD3 (>90%), BCDN3D (>90%), DNMT1 (>90%), DNMT3A/3L (>90%), DNMT3B/3L (>90%), DOT1L (>90%), ASH1L (>90%), NSD1 (>90%), NSD2(>90%),NSD3(>90%); Screened against 44 non-epigenetic targets by Eurofins (kinases, GPCRs, ion channels and transporters) at 1 μM, closest target as % of inhibition: KOP (20%), COX1 (17%), GR (15%), 5-HT2A (12%), M3 (12%), MAOA (12%), D1 (9%), acetylcholinesterase (7%), https://pubmed.ncbi.nlm.nih.gov/33591753/;
Selectivity Source Knowledge
Compound image
SGC6870N
HMT
PRMT6
IC50 > 50000
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000272b
SMILES
Cc1cc(C)cc([C@H]2c3cc(C)ccc3NC(=O)CN2C(=O)c2ccc(Br)s2)c1
InChIKey
NIPTUMFVYBXSMZ-QFIPXVFZSA-N
NCBI gene ID
UniProt ID
Synonyms
FLJ10559
Mode of action
Negative control for SGC6870
Affinity biochemical assay type
Radioactive biochemical assay
Affinity Biochemical Source Knowledge
Selectivity platform
Methyltransferase screen (radiometric assays)
Selectivity platform number of targets
32
Selectivity remarks
Screened at 1 µM and 10 µM, clean against a panel of 8 PRMTs, 21 protein lysine methyltransferases, 3 DNA methyltransferases, and one RNA methyltransferase, targets as % of activity in the screen at 1 µM: PRMT6 (17%), PRMT1 (>90%), PRMT3 (>90%), PRMT4 (>90%), PRMT5 (>90%), PRMT7 (>90%), PRMT8 (>90%), PRMT9 (>90%), G9a (>90%), GLP (>90%), SETDB1 (>90%), SUV39H1 (>90%), SUV39H2 (>90%), SUV420H1 (>90%), SUV420H2 (>90%), SETD7 (>90%), SETD8 (>90%), MLL1 (>90%), MLL3 (>90%), PRDM9 (>90%), PRC2 (>90%), SETD2 (>90%), SMYD2 (>90%), SMYD3 (>90%), BCDN3D (>90%), DNMT1 (>90%), DNMT3A/3L (>90%), DNMT3B/3L (>90%), DOT1L (>90%), ASH1L (>90%), NSD1 (>90%), NSD2(>90%),NSD3(>90%); Targets as % of activity in the screen at 10 µM: PRMT6 (8%), PRMT1 (>90%), PRMT3 (>90%), PRMT4 (>90%), PRMT5 (>90%), PRMT7 (>90%), PRMT8 (>90%), PRMT9 (>90%), G9a (>90%), GLP (>90%), SETDB1 (>90%), SUV39H1 (>90%), SUV39H2 (>90%), SUV420H1 (>90%), SUV420H2 (>90%), SETD7 (>90%), SETD8 (>90%), MLL1 (>90%), MLL3 (>90%), PRDM9 (>90%), PRC2 (>90%), SETD2 (>90%), SMYD2 (>90%), SMYD3 (>90%), BCDN3D (>90%), DNMT1 (>90%), DNMT3A/3L (>90%), DNMT3B/3L (>90%), DOT1L (>90%), ASH1L (>90%), NSD1 (>90%), NSD2(>90%),NSD3(>90%); Screened against 44 non-epigenetic targets by Eurofins (kinases, GPCRs, ion channels and transporters) at 1 μM, closest target as % of inhibition: KOP (20%), COX1 (17%), GR (15%), 5-HT2A (12%), M3 (12%), MAOA (12%), D1 (9%), acetylcholinesterase (7%), https://pubmed.ncbi.nlm.nih.gov/33591753/;
Selectivity Source Knowledge
Compound image
PPTN
GPCR
P2RY14
IC50 = 0.5
IC50 = 7.96
GPCR set
100 nM
Compound EUbOPEN ID
EUB0000274bCl
SMILES
Cl.O=C(O)c1cc(-c2ccc(C3CCNCC3)cc2)c2ccc(-c3ccc(C(F)(F)F)cc3)cc2c1
InChIKey
FKMVYPCBLWYNAV-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA0001
Mode of action
Antagonist
Negative control
PPTN-NC
Affinity biochemical assay type
FLIPR assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Fluorescence binding assay (using flow cytometry in hP2Y14R-expressing CHO cells)
Selectivity platform
GPCR screen (PDSP)
Selectivity platform number of targets
45
Selectivity remarks
Screened at 10 µM, >10,000-fold selectivity over other P2RY* receptors, closest targets: Ki(DRD3) = 884.3 nM, Ki(TMEM97) = 1120.99 nM, Ki(SIGMAR1) = 1180.59 nM, Ki(ADRA2B) = 2561.53 nM; Screened against 468 kinases (KinomeScan DiscoverX) at 1 µM, closest target: MAPKAPK2 (51% of contr.); Screened in Eurofins-Panlabs enzyme assay against 40 targets at 10 µM, closest targets: IC50(INSR) = 4.31 µM, IC50(EGFR) = 4.59 µM; Screened in Eurofins-Panlabs radioligand binding assay against 125 targets at 1 µM and 10 µM, closest targets: IC50(CYSLTR1) = 560 nM, IC50(HRH2) = 1390 nM, IC50(SLC6A3) = 2310 nM; Screened in PDSP screen against 45 receptors, ion channels and transporters at 10 µM, closest targets: Ki(D3 dopamine receptor) = 6.79 µM, Ki(d-opioid receptor) = 2.75 µM
Selectivity Source Knowledge
Compound image
PPTN
GPCR
P2RY14
IC50 = 7.94
Compound EUbOPEN ID
EUB0000274cCl
SMILES
Cl.OC(=O)c1cc(-c2ccc(cc2)C2CCNCC2)c2ccc(cc2c1)-c1ccc(cc1)C(F)(F)F
InChIKey
FKMVYPCBLWYNAV-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
KIAA0001
Mode of action
Antagonist
Affinity biochemical assay type
Antagonist activity human P2Y14R expressed in African green monkey COS7 cells assessed as inhibition of UDPG-induced [3H]inositol phosphate accumulation after 30 mins by liquid scintillation counting method
Affinity Biochemical Source Knowledge
Compound image
IPP/CNRS-A017
Dehydrogenase
DHODH
IC50 = 25
IC50 = 2.5
Other targets
100 nM
Compound EUbOPEN ID
EUB0000276b
SMILES
Cc1c(Oc2c(F)cccc2F)c(OC(C)C)nn1-c1ncc(C2CC2)cc1F
InChIKey
JNAABFZPXJJMPX-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
DHODH
Mode of action
Inhibitor
Negative control
IPP/CNRS-A019
Affinity biochemical assay type
Activity assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
Measles Virus Inhibition Assay
Affinity on-target cellular source knowledge
Selectivity remarks
No related human family members
Selectivity Source Knowledge
Compound image
BI01383298
SLC
SLC13A5
IC50 = 24
Ion Channel
1 µM
Compound EUbOPEN ID
EUB0000282b
SMILES
O=C(NCc1ccc(F)cc1)C1CCN(S(=O)(=O)c2cc(Cl)cc(Cl)c2)CC1
InChIKey
VUOYAALVGSMUHC-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
EIEE25 INDY NACT mIndy
Mode of action
Inhibitor
Negative control
BI01372674
Affinity on-target cellular assay type
Citrate uptake inhibition assay (HepG2 cells expressing endogenous SLC13A5)
Selectivity platform
SafetyScreen44™ (Eurofins)
Selectivity platform number of targets
44
Selectivity remarks
Screened at 10 µM against a panel of ion channels, GPCRs, hydrolases and other enzymes, closest target as % of contr.: NA+/SITE2/R (48%, voltage-gated ion channel) 1000-fold selective over closest family members: human SLC13A2 and SLC13A3 that share physiological substrates citrate and succinate
Selectivity Source Knowledge
Compound image
NVS-MLLT-1
YEATS
MLLT1
IC50 = 150
IC50 = 500
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000283b
SMILES
C[C@H]1CCCN1Cc1nc2cc(NC(=O)c3ccc4cnccc4c3)ccc2[nH]1
InChIKey
ZRTFTZCKJUNZIU-HNNXBMFYSA-N
NCBI gene ID
UniProt ID
Synonyms
ENL, LTG19, YEATS1
Mode of action
Inhibitor
Negative control
NVS-iMLLT-C
Affinity biochemical assay type
AlphaScreen assay
Affinity Biochemical Source Knowledge
Affinity on-target cellular assay type
NanoBRET assay (HEK293T cells)
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
42
Selectivity remarks
Selective across all bromodomains (IC50(CERC2) >40 µM, IC50(YESTS2/4) >20 µM (TR-FRET assay); Screened against 59 kinases (PSP kinase safety panel, Eurofins), closest targets: IC50(TRB2) = 3.5 µM, IC50(PIM1) = 8.6 µM, others >30 µM, Screened against 31 other targets (GPCRs, transporter and ion channels, PSP Principial panel 20118+, Eurofins), closest targets: IC50(ACES) = 250 nM, IC50(H3) = 290 nM, IC50(M2) = 1.8 µM, IC50(NET) = 8.7 µM, others >30 µM;
Selectivity Source Knowledge
Compound image
NVS-MLLT-1
YEATS
MLLT3
IC50 = 254
Epigenetic set
1 µM
Compound EUbOPEN ID
EUB0000283b
SMILES
C[C@H]1CCCN1Cc1nc2cc(NC(=O)c3ccc4cnccc4c3)ccc2[nH]1
InChIKey
ZRTFTZCKJUNZIU-HNNXBMFYSA-N
NCBI gene ID
UniProt ID
Synonyms
AF-9 AF9 YEATS3
Mode of action
Inhibitor
Negative control
NVS-iMLLT-C
Affinity biochemical assay type
AlphaScreen assay
Affinity Biochemical Source Knowledge
Selectivity platform
Bromodomain panel, literature
Selectivity platform number of targets
42
Selectivity remarks
Selective across all bromodomains (IC50(CERC2) >40 µM, IC50(YESTS2/4) >20 µM (TR-FRET assay); Screened against 59 kinases (PSP kinase safety panel, Eurofins), closest targets: IC50(TRB2) = 3.5 µM, IC50(PIM1) = 8.6 µM, others >30 µM, Screened against 31 other targets (GPCRs, transporter and ion channels, PSP Principial panel 20118+, Eurofins), closest targets: IC50(ACES) = 250 nM, IC50(H3) = 290 nM, IC50(M2) = 1.8 µM, IC50(NET) = 8.7 µM, others >30 µM;
Selectivity Source Knowledge
Compound image
TH-263
Protein Kinase
LIMK1
Negative Control
Kinase set
1 µM
Compound EUbOPEN ID
EUB0000285b
SMILES
O=C(NCc1ccccc1)c1ccc(S(=O)(=O)NCc2ccccc2)cc1
InChIKey
QDGVJMITKNOVTP-UHFFFAOYSA-N
NCBI gene ID
UniProt ID
Synonyms
LIMK
Mode of action
Negative control for TH-257
Affinity Biochemical Source Knowledge
Compound image